Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_1282Transcriptional regulator GntR family domain Aspartate aminotransferase EC 2611. (488 aa)    
Predicted Functional Partners:
BF49_1280
Similar to flavohemoprotein.
       0.654
BF49_1281
Hypothetical protein.
       0.613
BF49_1283
Transcriptional regulator.
       0.610
BF49_0563
Aspartokinase EC 2724; Belongs to the aspartokinase family.
   
 
 0.579
BF49_1090
Type III PLP lowspecificity Dthreonine aldolase.
  
 
  0.555
BF49_0689
Homoserine dehydrogenase EC 1113.
 
  
  0.469
BF49_1284
Glutamine amidotransferases classII.
       0.465
BF49_5647
Asparagine synthetase glutaminehydrolyzing EC 6354.
  
 
 0.442
BF49_4194
Prephenate dehydratase EC 42151.
  
 
 0.428
BF49_3262
Cyclohexadienyl dehydrogenase EC 13112EC 13143.
    
 0.426
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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