Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1288FIG00441898 hypothetical protein. (172 aa)    
Predicted Functional Partners:
rpiA
Ribose 5phosphate isomerase A EC 5316; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.806
BF49_4472
FIG065752 hypothetical protein.
  
     0.759
BF49_6501
Possible outer membrane protein possible porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.759
BF49_6574
Possible outer membrane protein possible porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.759
BF49_5754
Kinesinlike protein.
  
     0.757
BF49_6539
FIG00441513 hypothetical protein.
  
     0.754
BF49_1618
FIG00442417 hypothetical protein.
  
     0.743
BF49_3263
FIG00439845 hypothetical protein.
  
     0.740
BF49_4471
FIG065752 hypothetical protein.
  
     0.739
BF49_0618
FIG00450081 hypothetical protein.
  
     0.737
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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