STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1295TRAP transporter solute receptor unknown substrate 6; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (362 aa)    
Predicted Functional Partners:
BF49_1294
TRAP dicarboxylate transporter DctM subunit unknown substrate 6.
 
 
 0.883
BF49_1293
TRAP dicarboxylate transporter DctQ subunit unknown substrate 6.
 
 
 0.877
BF49_6997
Predicted gluconate TRAP family transporter DctM subunit.
 
  
 0.557
BF49_4354
TRAP dicarboxylate transporter DctM subunit unknown substrate 5.
  
  
  0.556
BF49_5116
TRAPtype transport system small permease component predicted Nacetylneuraminate transporter.
 
  
 0.538
BF49_6994
TRAP dicarboxylate transporter DctM subunit unknown substrate 5.
  
  
  0.513
BF49_4149
TRAP dicarboxylate transporter DctM subunit unknown substrate 3.
  
  
  0.466
BF49_1123
TRAP transporter 4TM12TM fusion protein unknown substrate 2.
   
 
  0.441
BF49_3360
TRAP transporter 4TM12TM fusion protein unknown substrate 1.
   
 
  0.441
BF49_4353
TRAP dicarboxylate transporter DctQ subunit unknown substrate 5.
  
 
 0.434
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.