STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
BF49_1301TRAP transporter solute receptor unknown substrate 6; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (363 aa)    
Predicted Functional Partners:
BF49_1294
TRAP dicarboxylate transporter DctM subunit unknown substrate 6.
 
 
 0.906
BF49_1293
TRAP dicarboxylate transporter DctQ subunit unknown substrate 6.
 
 
 0.895
BF49_1295
TRAP transporter solute receptor unknown substrate 6; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
     
  0.565
BF49_3247
TRAP transporter solute receptor unknown substrate 6; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
     
  0.564
BF49_0849
TRAP transporter solute receptor unknown substrate 6; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
     
  0.562
BF49_6997
Predicted gluconate TRAP family transporter DctM subunit.
 
  
 0.548
BF49_4354
TRAP dicarboxylate transporter DctM subunit unknown substrate 5.
  
  
  0.519
BF49_1302
Scaffold protein for 4Fe4S cluster assembly ApbC MRPlike; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.495
BF49_6994
TRAP dicarboxylate transporter DctM subunit unknown substrate 5.
  
  
  0.470
BF49_5116
TRAPtype transport system small permease component predicted Nacetylneuraminate transporter.
    
 0.468
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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