Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_1324Rhamnulokinase RhaK in alphaproteobacteria EC 2715. (414 aa)    
Predicted Functional Partners:
BF49_1323
Ribosexylosearabinosegalactoside ABCtype transport systems permease component 1.
  
  
 0.797
xylA
Xylose isomerase EC 5315; Belongs to the xylose isomerase family.
 
 
 0.735
BF49_1329
Lfucose mutarotase; Belongs to the RbsD / FucU family.
 
 
 0.721
BF49_5745
Fucose operon fucU protein; Belongs to the RbsD / FucU family.
 
 
 0.708
BF49_1322
Ribose ABC transport system permease protein RbsC TC 3A121; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.700
tal
Transaldolase EC 2212 Glucose6phosphate isomerase EC 5319; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.656
BF49_4434
Probable ABC transporter substratebinding protein.
 
   
 0.648
BF49_1764
Ribulose5phosphate 4epimerase and related epimerases and aldolases.
 
 
 0.634
BF49_1326
Ribulose5phosphate 4epimerase and related epimerases and aldolases.
 
 
 0.633
BF49_1333
Inosose dehydratase EC 42144.
 
 
 0.620
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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