Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1332Oligopeptide transport ATPbinding protein OppF TC 3A151. (101 aa)    
Predicted Functional Partners:
BF49_6662
Dipeptide transport system permease protein DppC TC 3A152.
 
 0.911
BF49_7196
Dipeptide transport system permease protein DppC TC 3A152.
 
 0.909
BF49_4938
Oligopeptide transport system permease protein OppC TC 3A151.
 
 0.908
BF49_1402
Dipeptide transport system permease protein DppC TC 3A152.
 
 0.902
BF49_1352
Dipeptide transport system permease protein DppC TC 3A152.
 
 0.901
BF49_4042
Putative polyamine transporter Oligopeptide transport system permease protein OppC TC 3A151.
 
 0.901
BF49_1829
Putative glutathione transporter permease component.
 
 0.899
BF49_3305
Oligopeptide transport system permease protein OppC TC 3A151.
 
 0.898
BF49_1820
Putative glutathione transporter permease component.
 
 0.897
BF49_6956
Cell processes transport of small molecules amino acids amines peptides.
 
 0.896
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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