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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1339Transcriptional regulator GntR family. (236 aa)    
Predicted Functional Partners:
BF49_1340
Hydantoin racemase EC 5199.
       0.778
BF49_1858
Transcriptional regulator GntR family.
  
     0.757
BF49_6080
Transcriptional regulator GntR family.
  
     0.682
BF49_3240
Transcriptional regulator GntR family.
  
     0.627
BF49_4838
Transcriptional regulator NanR.
 
  
 0.612
BF49_1481
Transcriptional regulator GntR family.
 
  
 0.567
BF49_1338
Maleate cistrans isomerase.
       0.506
BF49_5173
Acetolactate synthase small subunit EC 2216.
   
    0.504
BF49_1337
Dhydantoinase EC 3522.
       0.484
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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