Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1349Transcriptional regulator RpiR family. (318 aa)    
Predicted Functional Partners:
BF49_1350
ABC transporter peptidebinding protein.
 
     0.608
tal
Transaldolase EC 2212 Glucose6phosphate isomerase EC 5319; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
    
 0.602
glk
Glucokinase EC 2712; Belongs to the bacterial glucokinase family.
 
  
 0.582
BF49_1132
2dehydro3deoxyphosphogluconate aldolase EC 41214 4Hydroxy2oxoglutarate aldolase EC 41316.
 
   
 0.575
glmM
Phosphoglucosamine mutase EC 54210; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
 
 0.459
BF49_3501
Phosphoglucosamine mutase EC 54210 Phosphomannomutase EC 5428.
  
 
 0.459
BF49_1352
Dipeptide transport system permease protein DppC TC 3A152.
 
     0.434
BF49_1351
Dipeptide transport system permease protein DppB TC 3A152.
 
     0.431
BF49_2866
Hypothetical protein.
  
  
 0.421
BF49_1133
2dehydro3deoxygluconate kinase EC 27145.
 
   
 0.417
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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