STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1391Bll2681 protein. (456 aa)    
Predicted Functional Partners:
BF49_1390
Alcohol dehydrogenase EC 1111.
 
 
   0.881
BF49_1389
Stress responsive alphabeta barrel domain protein Dabb.
 
     0.811
BF49_1393
Catechol 12dioxygenase EC 113111.
 
     0.791
BF49_1392
3hydroxyisobutyrate dehydrogenase.
    
  0.742
upp
Uracil phosphoribosyltransferase EC 2429; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.624
upp-2
Uracil phosphoribosyltransferase EC 2429; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.624
hutH
Histidine ammonialyase EC 4313.
  
 
 0.586
hutI
Imidazolonepropionase EC 3527.
  
 
 0.578
BF49_3159
Nformylglutamate deformylase EC 35168.
  
 
 0.564
BF49_1388
Chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
       0.550
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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