Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_13923hydroxyisobutyrate dehydrogenase. (300 aa)    
Predicted Functional Partners:
BF49_1391
Bll2681 protein.
    
  0.742
BF49_1393
Catechol 12dioxygenase EC 113111.
       0.741
BF49_1390
Alcohol dehydrogenase EC 1111.
     
 0.730
BF49_1389
Stress responsive alphabeta barrel domain protein Dabb.
  
    0.719
BF49_1515
Glyoxylate carboligase EC 41147; Belongs to the TPP enzyme family.
 
 
 0.682
BF49_1719
24dihydroxyhept2ene17dioic acid aldolase EC 412n4; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.552
BF49_5943
Putative 24dihydroxyhept2ene17dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.552
BF49_1397
Ribose ABC transport system permease protein RbsC TC 3A121; Belongs to the binding-protein-dependent transport system permease family.
     
 0.535
BF49_1396
Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
     
 0.534
BF49_1394
DLactate dehydrogenase cytochrome cdependent EC 1124.
       0.530
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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