Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1402Dipeptide transport system permease protein DppC TC 3A152. (307 aa)    
Predicted Functional Partners:
BF49_1403
Dipeptide transport system permease protein DppB TC 3A152.
 
 0.987
BF49_1401
Oligopeptide transport system permease protein OppB TC 3A151; Belongs to the ABC transporter superfamily.
 0.977
BF49_1400
Oligopeptide transport ATPbinding protein OppF TC 3A151; Belongs to the ABC transporter superfamily.
 0.970
BF49_1407
Dipeptide transport system permease protein DppB TC 3A152.
 
 0.963
BF49_1404
Peptide/nickel transport system substrate-binding protein; Dipeptidebinding ABC transporter periplasmic substratebinding component TC 3A152 Putative heminbinding lipoprotein.
 
 0.959
BF49_6053
Dipeptide transport system permease protein DppB TC 3A152.
 
 0.948
BF49_4043
Oligopeptide transport system permease protein OppB TC 3A151.
 
 0.924
BF49_4077
Dipeptide transport system permease protein DppB TC 3A152.
 
 0.923
BF49_7197
Oligopeptide transport system permease protein OppB TC 3A151; Belongs to the ABC transporter superfamily.
 0.912
BF49_1828
Putative glutathione transporter permease component.
 
 0.910
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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