Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1413Hydantoin racemase EC 5199. (220 aa)    
Predicted Functional Partners:
BF49_1412
Dhydantoinase EC 3522.
 
   
 0.826
BF49_2831
Hydantoin racemase EC 5199.
  
     0.771
BF49_4325
NcarbamoylDamino acid hydrolase EC 35177 putative.
 
   
 0.694
BF49_1415
NcarbamoylDamino acid hydrolase EC 35177 putative.
 
   
 0.654
BF49_1409
Oxidoreductase.
 
     0.651
BF49_2210
NcarbamoylDamino acid hydrolase EC 35177 putative.
 
   
 0.636
BF49_1337
Dhydantoinase EC 3522.
 
   
 0.574
BF49_1410
3oxoacylacylcarrier protein reductase EC 111100.
       0.542
BF49_1411
Putative UDPglucose 4epimerase EC5132.
       0.542
BF49_1408
Peptide/nickel transport system substrate-binding protein; Dipeptidebinding ABC transporter periplasmic substratebinding component TC 3A152 Putative heminbinding lipoprotein.
 
     0.502
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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