Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_1480Uncharacterized oxidoreductase ydgJ EC 1. (308 aa)    
Predicted Functional Partners:
BF49_1479
Aldose 1epimerase EC 5133; Converts alpha-aldose to the beta-anomer.
 
 
 0.984
BF49_1478
14lactonase EC 31125.
 
 
 0.957
BF49_1481
Transcriptional regulator GntR family.
 
     0.846
BF49_1483
Putative sugar ABC transport system permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family.
  
    0.808
BF49_1484
Putative sugar ABC transport system ATPbinding protein YtfR EC 36317.
  
  
 0.790
BF49_1482
Putative sugar ABC transport system permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
  
    0.789
BF49_2826
2dehydro3deoxygalactonokinase EC 27158.
 
   
 0.724
BF49_1477
Larabinosebinding periplasmic protein precursor AraF TC 3A122.
 
     0.722
BF49_1486
Predicted 2keto3deoxyxylonate dehydratase.
 
     0.704
BF49_4747
Gluconolactonase EC 31117.
 
 
 0.701
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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