Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1486Predicted 2keto3deoxyxylonate dehydratase. (390 aa)    
Predicted Functional Partners:
BF49_1480
Uncharacterized oxidoreductase ydgJ EC 1.
 
     0.704
BF49_3519
Maleylacetoacetate isomerase EC 5212 Glutathione Stransferase zeta EC 25118.
     
  0.600
BF49_1371
FIG00439895 hypothetical protein.
 
   
 0.595
BF49_1865
Gluconolactonase EC 31117.
 
   
 0.532
BF49_1312
Gluconolactonase EC 31117.
 
   
 0.530
BF49_1487
HEAT repeatcontaining protein.
       0.520
BF49_1488
Adenylylsulfate reductase betasubunit EC 18992.
       0.520
BF49_1866
Gluconolactonase EC 31117.
 
   
 0.519
BF49_3903
Lfuconolactone hydrolase.
 
   
 0.514
BF49_1736
Gluconolactonase EC 31117.
 
   
 0.513
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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