Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1505Ornithine decarboxylase EC 41117. (785 aa)    
Predicted Functional Partners:
BF49_5506
Arginase EC 3531; Belongs to the arginase family.
    
 0.958
BF49_1681
Acetylornithine aminotransferase EC 26111; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.939
BF49_3186
Ornithine decarboxylase EC 41117 Arginine decarboxylase EC 41119; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.917
BF49_1506
GCN5related Nacetyltransferase.
       0.797
BF49_2330
FIG017823 ATPase MoxR family.
   
 
 0.681
BF49_1811
Spermidine synthase EC 25116.
  
 
 0.561
BF49_5073
FIG01004535 hypothetical protein.
  
 
 0.561
BF49_1502
Periplasmic aromatic aldehyde oxidoreductase ironsulfur subunit YagT.
       0.528
BF49_1503
Periplasmic aromatic aldehyde oxidoreductase FAD binding subunit YagS.
       0.520
BF49_1504
Xanthine dehydrogenase molybdenum binding subunit EC 11714.
       0.520
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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