Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1546Twocomponent sensor histidine kinase PleC. (776 aa)    
Predicted Functional Partners:
BF49_6444
Chemotaxis protein CheV EC 273.
 0.991
BF49_6445
Pole remodelling regulatory diguanylate cyclase.
 
 0.978
BF49_2142
Twocomponent hybrid sensor and regulator.
  
 0.948
BF49_1306
Periplasmic sensor signal transduction histidine kinase.
  
 
0.931
BF49_3244
Chemotaxis protein methyltransferase CheR EC 21180.
 
0.927
BF49_1446
Sensory box histidine kinaseresponse regulator.
 
0.899
BF49_7224
Twocomponent response regulator.
 0.887
BF49_2995
DNAbinding response regulator PetR.
 
 0.881
BF49_0769
Twocomponent hybrid sensor and regulator.
 
 0.861
BF49_0183
Twocomponent hybrid sensor and regulator.
 
0.847
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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