Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_1547Hydrogen peroxideinducible genes activator; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
BF49_1552
NADdependent formate dehydrogenase delta subunit.
 
   
 0.866
BF49_1550
NADdependent formate dehydrogenase alpha subunit.
 
     0.835
fdhD
Formate dehydrogenase chain D EC 1212; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.795
BF49_1548
NADdependent formate dehydrogenase gamma subunit.
 
     0.733
BF49_1549
NADdependent formate dehydrogenase beta subunit.
 
     0.718
BF49_2047
Formate dehydrogenase chain D EC 1212; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.
 
     0.582
BF49_1275
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.425
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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