Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1570Flp pilus assembly protein pilin Flp. (54 aa)    
Predicted Functional Partners:
BF49_0175
Flp pilus assembly protein RcpCCpaB.
  
  
 0.614
BF49_4213
Flp pilus assembly protein RcpCCpaB.
  
  
 0.614
BF49_0178
Type IIIV secretion system ATPase TadZCpaE associated with Flp pilus assembly.
  
  
 0.589
BF49_4210
Type IIIV secretion system ATPase TadZCpaE associated with Flp pilus assembly.
  
  
 0.589
BF49_4214
Type IV prepilin peptidase TadVCpaA.
  
  
 0.564
BF49_1571
Blr2472 unknown protein.
       0.495
BF49_4208
Flp pilus assembly protein TadB.
  
  
 0.457
BF49_1569
Hypothetical protein.
       0.448
BF49_0176
Type IIIV secretion system secretin RcpACpaC associated with Flp pilus assembly; Belongs to the bacterial secretin family.
  
  
 0.445
BF49_4212
Type IIIV secretion system secretin RcpACpaC associated with Flp pilus assembly; Belongs to the bacterial secretin family.
  
  
 0.445
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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