Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1612FIG01006073 hypothetical protein. (1090 aa)    
Predicted Functional Partners:
BF49_1611
FIG01006170 hypothetical protein.
       0.734
BF49_1609
Hypothetical protein.
       0.713
BF49_1610
Hypothetical protein.
       0.685
BF49_6320
FIG00439495 hypothetical protein.
 
     0.677
BF49_6222
InterPro IPR001687IPR002937 COGs COG0492.
  
     0.648
BF49_4240
FIG01004290 hypothetical protein.
  
     0.644
BF49_6641
Bll4915 protein.
  
     0.642
BF49_5790
Flagellar hookassociated protein FliD; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
     0.636
BF49_5788
Flagellar hookassociated protein FliD; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
     0.634
BF49_5798
Flagellar hookassociated protein FliD; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
     0.627
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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