Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1613FIG00445928 hypothetical protein. (253 aa)    
Predicted Functional Partners:
BF49_1616
Flagellar biosynthesis protein FlhF.
 
     0.857
BF49_5803
FIG00443056 hypothetical protein.
  
     0.774
BF49_1563
FIG00442554 hypothetical protein.
  
     0.773
BF49_5782
Flagellar hookassociated protein FlgL.
  
     0.770
BF49_5822
FIG00741759 hypothetical protein.
  
     0.770
BF49_1614
FIG00441418 hypothetical protein.
       0.768
BF49_3269
FIG00440552 hypothetical protein.
  
     0.767
BF49_5799
Flagellar hookassociated protein FliD.
  
     0.766
BF49_5790
Flagellar hookassociated protein FliD; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.765
BF49_6906
23dihydroxybenzoateAMP ligase EC 27758.
  
     0.765
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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