Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_1622Transcriptional regulator MucR family. (138 aa)    
Predicted Functional Partners:
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.679
BF49_1623
Basic prolinerich protein precursor.
       0.641
BF49_3266
FIG00450348 hypothetical protein.
  
     0.622
BF49_7037
Hypothetical protein.
  
     0.572
BF49_0596
FIG003437 hypothetical with DnaJlike domain.
  
     0.548
BF49_0961
DNA polymerase III chi subunit EC 2777.
  
     0.522
BF49_0086
FIG041266 ATPdependent nuclease subunit B.
  
     0.508
secE
Preprotein translocase subunit SecE TC 3A511; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.501
BF49_6778
Exopolysacchride production negative regulator ExoR.
  
   
 0.489
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.474
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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