Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1645Pyrrolidonecarboxylate peptidase EC 34193; Removes 5-oxoproline from various penultimate amino acid residues except L-proline. (217 aa)    
Predicted Functional Partners:
BF49_1644
LAO/AO transport system kinase; YgfD protein that forms a complex with the methylmalonylCoA mutase in a pathway for conversion of succinylCoA to propionylCoA.
       0.853
BF49_1638
Bll3052 protein.
   
   0.837
BF49_7226
FIG00440594 hypothetical protein.
  
 
 
 0.790
BF49_5969
Bll5679 protein.
  
 
 
 0.786
BF49_4189
Hypothetical protein.
   
 
 0.744
BF49_1883
Serinethreonine protein kinase.
    
 
 0.741
BF49_3193
Highaffnity carbon uptake protein HatHatR.
   
   0.739
BF49_2158
Probable RuBisCoexpression protein CbbX.
    
   0.734
ndk
Nucleoside diphosphate kinase EC 2746; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.729
BF49_4570
Hypothetical protein.
    
 
 0.724
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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