Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1646Bll3046 protein. (456 aa)    
Predicted Functional Partners:
BF49_6085
FIG00983977 hypothetical protein.
  
     0.764
BF49_6586
FIG00442552 hypothetical protein.
 
     0.763
BF49_0652
FIG01007117 hypothetical protein.
  
     0.760
BF49_3794
Nitrous oxide reductase maturation protein NosR.
  
  
 0.759
BF49_6592
Mlr8448 protein.
  
     0.759
BF49_1613
FIG00445928 hypothetical protein.
  
     0.733
BF49_3907
Bsl0098 protein.
 
     0.723
BF49_5803
FIG00443056 hypothetical protein.
  
     0.721
BF49_3789
Nitrous oxide reductase maturation protein outermembrane lipoprotein NosL.
  
 
 0.719
BF49_3970
Mll2248 protein.
  
     0.718
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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