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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1648Serine protease precursor. (568 aa)    
Predicted Functional Partners:
BF49_1650
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.879
BF49_1649
FIG00440949 hypothetical protein.
     
 0.849
gmk
Guanylate kinase EC 2748; Essential for recycling GMP and indirectly, cGMP.
    
 0.533
BF49_6683
Glycosyl hydrolase BNR repeat.
 
 0.511
BF49_2504
Hypothetical protein.
  
 0.493
BF49_4392
Hypothetical protein.
 
  
 0.453
BF49_7157
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.451
BF49_2686
Osuccinylbenzoic acidCoA ligase EC 62126.
 
  
 0.447
BF49_3572
FIG01200701 possible membrane protein.
  
 0.441
BF49_4411
FIG00853353 hypothetical protein.
  
 0.441
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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