Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1680Putative transmembrane antisigma factor. (255 aa)    
Predicted Functional Partners:
BF49_1679
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.924
BF49_1677
Bll3016 hypothetical protein.
 
     0.881
BF49_1678
Copper binding protein plastocyaninazurin family.
 
     0.732
BF49_2229
RNA polymerase sigmaH factor AlgT; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.673
BF49_4744
Probable RNA polymerase sigma subunit; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.649
BF49_1039
RNA polymerase ECFtype sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.624
BF49_2096
RNA polymerase sigma54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.608
BF49_3220
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.608
BF49_5009
Malic enzyme.
  
     0.602
BF49_5008
FOG WD40like repeat.
  
     0.601
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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