Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_1685Radical SAM protein required for addition of adenosine to hopane skeleton HpnH. (386 aa)    
Predicted Functional Partners:
BF49_1683
Hopanoidassociated RND transporter HpnN.
 
   
 0.874
BF49_1687
5methylthioadenosine nucleosidase EC 32216 Sadenosylhomocysteine nucleosidase EC 3229.
 
   
 0.868
BF49_1688
Squalenehopene cyclase EC 549917.
 
   
 0.868
ispH
4hydroxy3methylbut2enyl diphosphate reductase EC 11712; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
   
 0.774
BF49_1689
Phytoene desaturase EC 11499.
 
  
 0.757
BF49_5100
Dihydroflavonol4reductase EC 111219.
 
   
 0.726
BF49_1691
Phytoene synthase EC 25132.
 
   
 0.681
BF49_3794
Nitrous oxide reductase maturation protein NosR.
  
  
 0.667
pqqC
Pyrroloquinolinequinone synthase EC 13311; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.633
pqqB
Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.623
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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