Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_1688Squalenehopene cyclase EC 549917. (655 aa)    
Predicted Functional Partners:
BF49_1687
5methylthioadenosine nucleosidase EC 32216 Sadenosylhomocysteine nucleosidase EC 3229.
 
   
 0.960
BF49_1690
Phytoene synthase EC 25132.
 
  
 0.938
BF49_1689
Phytoene desaturase EC 11499.
 
   
 0.937
BF49_1691
Phytoene synthase EC 25132.
 
  
 0.935
BF49_1685
Radical SAM protein required for addition of adenosine to hopane skeleton HpnH.
 
   
 0.868
BF49_1683
Hopanoidassociated RND transporter HpnN.
 
     0.797
BF49_5100
Dihydroflavonol4reductase EC 111219.
 
 
 0.787
BF49_7240
Octaprenyl diphosphate synthase EC 25190 Dimethylallyltransferase EC 2511 2E6Efarnesyl diphosphate synthase EC 25110 Geranylgeranyl diphosphate synthase EC 25129; Belongs to the FPP/GGPP synthase family.
  
 
 0.697
BF49_2260
Octaprenyl diphosphate synthase EC 25190 Dimethylallyltransferase EC 2511 2E6Efarnesyl diphosphate synthase EC 25110 Geranylgeranyl pyrophosphate synthetase EC 25129; Belongs to the FPP/GGPP synthase family.
  
 
 0.621
BF49_1681
Acetylornithine aminotransferase EC 26111; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.611
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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