Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BF49_1696Hopanoid 2methyltransferase. (514 aa)    
Predicted Functional Partners:
eutC
Ethanolamine ammonialyase light chain EC 4317; Belongs to the EutC family.
       0.810
hemE
Uroporphyrinogen III decarboxylase EC 41137; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.621
BF49_1688
Squalenehopene cyclase EC 549917.
 
   
 0.596
BF49_1691
Phytoene synthase EC 25132.
 
  
 0.591
BF49_1687
5methylthioadenosine nucleosidase EC 32216 Sadenosylhomocysteine nucleosidase EC 3229.
 
   
 0.582
BF49_1694
Predicted exporter of the RND superfamily Rpal 4267.
 
     0.579
BF49_1697
Hypothetical protein.
       0.572
BF49_1685
Radical SAM protein required for addition of adenosine to hopane skeleton HpnH.
 
  
 0.559
BF49_3938
FIG01005113 hypothetical protein.
  
     0.427
BF49_1690
Phytoene synthase EC 25132.
 
  
 0.426
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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