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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1714Protein containing domains DUF404 DUF407 DUF403. (841 aa)    
Predicted Functional Partners:
BF49_1713
Protein containing transglutaminaselike domain putative cysteine protease.
 
  
 0.980
BF49_1715
Large protein containing transglutaminaselike domain.
 
  
 0.975
BF49_6038
Protein containing domains DUF403.
 
  
 0.947
BF49_2865
Bll2821 protein.
 
  
 0.916
BF49_6037
Protein containing transglutaminaselike domain putative cysteine protease.
 
  
 0.916
BF49_2873
Transglutaminaselike domain.
 
  
 0.904
BF49_6039
Protein containing domains DUF404 DUF407.
 
  
0.824
BF49_6036
FIG00441227 hypothetical protein.
 
  
 0.797
BF49_5086
Hypothetical protein.
 
     0.594
BF49_6362
FIG00445153 hypothetical protein.
 
     0.540
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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