Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1715Large protein containing transglutaminaselike domain. (1089 aa)    
Predicted Functional Partners:
BF49_1714
Protein containing domains DUF404 DUF407 DUF403.
 
  
 0.977
guaA
GMP synthase glutaminehydrolyzing EC 6352; Catalyzes the synthesis of GMP from XMP.
  
 
  0.938
BF49_1713
Protein containing transglutaminaselike domain putative cysteine protease.
 
    
0.857
BF49_6039
Protein containing domains DUF404 DUF407.
 
    0.780
BF49_2873
Transglutaminaselike domain.
 
     0.767
BF49_6038
Protein containing domains DUF403.
 
  
 0.752
BF49_5086
Hypothetical protein.
 
     0.710
BF49_6362
FIG00445153 hypothetical protein.
 
     0.696
BF49_2072
5nucleotidase EC 3135; Belongs to the 5'-nucleotidase family.
    
  0.695
purH
IMP cyclohydrolase EC 35410 Phosphoribosylaminoimidazolecarboxamide formyltransferase EC 2123.
     
  0.677
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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