Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BF49_0605 | BF49_1728 | BF49_0605 | BF49_1728 | Hypothetical protein. | FIG01008325 hypothetical protein. | 0.479 |
BF49_1435 | BF49_1728 | BF49_1435 | BF49_1728 | CobN component of cobalt chelatase involved in B12 biosynthesis. | FIG01008325 hypothetical protein. | 0.428 |
BF49_1435 | ubiA | BF49_1435 | BF49_3052 | CobN component of cobalt chelatase involved in B12 biosynthesis. | 4hydroxybenzoate polyprenyltransferase EC 25139; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.612 |
BF49_1728 | BF49_0605 | BF49_1728 | BF49_0605 | FIG01008325 hypothetical protein. | Hypothetical protein. | 0.479 |
BF49_1728 | BF49_1435 | BF49_1728 | BF49_1435 | FIG01008325 hypothetical protein. | CobN component of cobalt chelatase involved in B12 biosynthesis. | 0.428 |
BF49_1728 | BF49_1729 | BF49_1728 | BF49_1729 | FIG01008325 hypothetical protein. | Alkylated DNA repair protein AlkB. | 0.624 |
BF49_1728 | BF49_1730 | BF49_1728 | BF49_1730 | FIG01008325 hypothetical protein. | FIG00443816 hypothetical protein. | 0.598 |
BF49_1728 | BF49_4301 | BF49_1728 | BF49_4301 | FIG01008325 hypothetical protein. | NADPHdependent glyceraldehyde3phosphate dehydrogenase EC 12113 NADdependent glyceraldehyde3phosphate dehydrogenase EC 12112; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.514 |
BF49_1728 | BF49_4835 | BF49_1728 | BF49_4835 | FIG01008325 hypothetical protein. | Hypothetical protein CbbY. | 0.447 |
BF49_1728 | BF49_6582 | BF49_1728 | BF49_6582 | FIG01008325 hypothetical protein. | PROBABLE TRANSMEMBRANE PROTEIN. | 0.506 |
BF49_1728 | ndk | BF49_1728 | BF49_0951 | FIG01008325 hypothetical protein. | Nucleoside diphosphate kinase EC 2746; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.461 |
BF49_1728 | thyA | BF49_1728 | BF49_5161 | FIG01008325 hypothetical protein. | Thymidylate synthase EC 21145; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.461 |
BF49_1728 | ubiA | BF49_1728 | BF49_3052 | FIG01008325 hypothetical protein. | 4hydroxybenzoate polyprenyltransferase EC 25139; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.421 |
BF49_1729 | BF49_1728 | BF49_1729 | BF49_1728 | Alkylated DNA repair protein AlkB. | FIG01008325 hypothetical protein. | 0.624 |
BF49_1729 | BF49_1730 | BF49_1729 | BF49_1730 | Alkylated DNA repair protein AlkB. | FIG00443816 hypothetical protein. | 0.852 |
BF49_1730 | BF49_1728 | BF49_1730 | BF49_1728 | FIG00443816 hypothetical protein. | FIG01008325 hypothetical protein. | 0.598 |
BF49_1730 | BF49_1729 | BF49_1730 | BF49_1729 | FIG00443816 hypothetical protein. | Alkylated DNA repair protein AlkB. | 0.852 |
BF49_4301 | BF49_1728 | BF49_4301 | BF49_1728 | NADPHdependent glyceraldehyde3phosphate dehydrogenase EC 12113 NADdependent glyceraldehyde3phosphate dehydrogenase EC 12112; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | FIG01008325 hypothetical protein. | 0.514 |
BF49_4835 | BF49_1728 | BF49_4835 | BF49_1728 | Hypothetical protein CbbY. | FIG01008325 hypothetical protein. | 0.447 |
BF49_6582 | BF49_1728 | BF49_6582 | BF49_1728 | PROBABLE TRANSMEMBRANE PROTEIN. | FIG01008325 hypothetical protein. | 0.506 |
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