Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1770FIG00444536 hypothetical protein; Belongs to the D-glutamate cyclase family. (271 aa)    
Predicted Functional Partners:
BF49_6927
Allophanate hydrolase 2 subunit 1 EC 35154.
 
    0.935
BF49_6926
Allophanate hydrolase 2 subunit 2 EC 35154.
 
    0.926
pxpA
Lactam utilization protein LamB; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.920
BF49_1771
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
 
     0.822
BF49_1731
FIG01006931 hypothetical protein.
 
     0.660
BF49_1769
Branchedchain amino acid ABC transporter amino acidbinding protein TC 3A141.
 
     0.639
BF49_1645
Pyrrolidonecarboxylate peptidase EC 34193; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
  
    0.607
BF49_1109
Transcriptional regulator IclR family.
  
    0.528
BF49_1120
Transcriptional regulator IclR family.
  
    0.528
BF49_1518
Transcriptional regulator IclR family.
  
    0.528
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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