Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_1774Malate dehydrogenase EC 11137; Belongs to the LDH2/MDH2 oxidoreductase family. (357 aa)    
Predicted Functional Partners:
BF49_2942
Aspartate aminotransferase EC 2611.
     
 0.927
BF49_3121
Dalanine aminotransferase EC 26121.
   
  0.912
dadA
Damino acid dehydrogenase small subunit EC 14991; Oxidative deamination of D-amino acids.
    
 0.909
BF49_4845
Damino acid dehydrogenase small subunit EC 14991.
    
 0.909
BF49_1720
Hypothetical oxidoreductase YbiC homolog; Belongs to the LDH2/MDH2 oxidoreductase family.
  
  
 
0.908
hisC
Biosynthetic Aromatic amino acid aminotransferase beta EC 26157 Histidinolphosphate aminotransferase EC 2619; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.906
hisC-2
Histidinolphosphate aminotransferase EC 2619; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.906
BF49_0507
4hydroxyphenylpyruvate dioxygenase EC 1131127.
    
 0.902
BF49_5845
Fumarate hydratase class I aerobic EC 4212; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.756
BF49_1772
Betaureidopropionase EC 3516.
 
  
 0.674
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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