Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1784AspGlu racemase. (216 aa)    
Predicted Functional Partners:
BF49_1781
Transcriptional regulators.
 
     0.735
BF49_1782
Adenosylmethionine8amino7oxononanoate aminotransferase EC 26162; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.619
BF49_0292
Bll0558 unknown protein.
  
     0.595
BF49_1783
Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.
       0.584
BF49_1404
Peptide/nickel transport system substrate-binding protein; Dipeptidebinding ABC transporter periplasmic substratebinding component TC 3A152 Putative heminbinding lipoprotein.
 
     0.566
BF49_6304
Glyoxalasebleomycin resistance proteindioxygenase.
  
     0.553
BF49_4097
Bll7611 hypothetical protein.
  
     0.507
BF49_1999
Membrane protein.
 
     0.484
BF49_4098
Bll7611 hypothetical protein.
  
     0.473
BF49_3137
Bll7611 hypothetical protein.
  
     0.447
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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