Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1789Bll2903 hypothetical protein. (220 aa)    
Predicted Functional Partners:
BF49_1788
Alphaketoglutarate permease.
       0.786
BF49_2790
Blr7258 probable sulfitecytochrome c oxidoreductase subunit B.
 
 
 0.751
BF49_1787
Putative cytochrome P450 hydroxylase.
     
 0.671
BF49_1346
5Hydroxyisourate Hydrolase HIUase EC 35217.
   
   0.603
BF49_1786
Bsl2907 protein.
       0.527
BF49_1280
Similar to flavohemoprotein.
 
  
 0.487
BF49_5467
2oxo4hydroxy4carboxy5ureidoimidazoline OHCU decarboxylase 5Hydroxyisourate Hydrolase HIUase EC 35217.
  
   0.475
BF49_2789
Twinarginine translocation pathway signal.
  
     0.460
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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