Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1803Hypothetical protein. (241 aa)    
Predicted Functional Partners:
BF49_1814
Hypothetical protein.
 
   
 0.745
rnr
3to5 exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
 
  
 0.639
BF49_1804
FIG00791660 hypothetical protein.
 
     0.558
BF49_6581
Carboxynorspermidine dehydrogenase.
  
     0.550
BF49_3994
FIG00445140 hypothetical protein.
  
     0.549
BF49_1802
Phenylacetic acid degradation operon negative regulatory protein PaaX.
       0.484
BF49_7290
InterPro IPR001128 COGs COG2124; Belongs to the cytochrome P450 family.
  
     0.463
BF49_1806
Hypothetical protein.
 
     0.412
BF49_1809
Betaketoadipate enollactone hydrolase EC 31124.
 
   
 0.409
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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