Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1806Hypothetical protein. (197 aa)    
Predicted Functional Partners:
BF49_1807
Polyhydroxyalkanoic acid synthase.
 
     0.892
BF49_1808
FIG00444077 hypothetical protein.
       0.853
BF49_1809
Betaketoadipate enollactone hydrolase EC 31124.
 
  
  0.619
BF49_0649
Bll0129 hypothetical protein.
 
  
  0.561
BF49_1805
FIG00440549 hypothetical protein.
       0.531
BF49_1416
Aminotransferase class III.
 
  
 0.515
BF49_1804
FIG00791660 hypothetical protein.
 
    0.503
BF49_6425
Aldoxime dehydratase.
  
     0.496
BF49_1125
Blr3934 hypothetical protein.
  
     0.473
BF49_3105
Putative Omethyl transferase.
 
     0.452
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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