STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1815FIG00443026 hypothetical protein. (266 aa)    
Predicted Functional Partners:
BF49_1814
Hypothetical protein.
 
   
 0.896
BF49_1816
FIG00852950 hypothetical protein.
       0.796
rnr
3to5 exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
 
    0.686
BF49_1813
Epoxide hydrolase.
     
 0.646
BF49_3994
FIG00445140 hypothetical protein.
  
     0.565
BF49_6581
Carboxynorspermidine dehydrogenase.
  
     0.530
BF49_1817
Hypothetical protein.
       0.506
BF49_7290
InterPro IPR001128 COGs COG2124; Belongs to the cytochrome P450 family.
  
     0.494
BF49_1812
NADPHcytochrome P450 reductase.
       0.409
BF49_1232
Bipolar DNA helicase HerA.
  
     0.405
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.