Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1836Transcriptional regulator TetR family. (220 aa)    
Predicted Functional Partners:
BF49_1835
Probable CoZnCd efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.853
BF49_1834
RND multidrug efflux transporter Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.731
BF49_6320
FIG00439495 hypothetical protein.
  
     0.644
BF49_6151
FIG00441968 hypothetical protein.
  
     0.594
BF49_6270
Hypothetical protein.
  
     0.562
BF49_5969
Bll5679 protein.
  
     0.556
BF49_3904
Blr0101 hypothetical protein.
  
     0.530
BF49_4240
FIG01004290 hypothetical protein.
  
     0.513
BF49_1616
Flagellar biosynthesis protein FlhF.
  
     0.504
BF49_6222
InterPro IPR001687IPR002937 COGs COG0492.
  
     0.503
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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