Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1887Catechol 12dioxygenase EC 113111. (305 aa)    
Predicted Functional Partners:
BF49_1390
Alcohol dehydrogenase EC 1111.
 
 0.993
BF49_7192
Alcohol dehydrogenase EC 1111.
 
 
 0.977
BF49_2305
Dienelactone hydrolase family.
   
 
 0.930
BF49_2977
Dienelactone hydrolase family.
   
 
 0.930
BF49_4833
Dienelactone hydrolase family.
   
 
 0.930
BF49_7316
Dienelactone hydrolase family.
   
 
 0.930
BF49_4675
Hypothetical protein.
   
 
 0.920
BF49_1393
Catechol 12dioxygenase EC 113111.
  
  
 
0.905
BF49_3496
Muconate cycloisomerase EC 5511; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
 
 0.785
BF49_5750
LalanineDLglutamate epimerase.
  
 
 0.785
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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