STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1889TRAPtype C4dicarboxylate transport system large permease component. (439 aa)    
Predicted Functional Partners:
BF49_1890
TRAPtype C4dicarboxylate transport system small permease component.
 
 0.980
BF49_1891
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.962
BF49_1856
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.918
BF49_1941
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.868
BF49_4749
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 0.847
BF49_5115
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.846
BF49_5576
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.846
BF49_7153
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.846
BF49_4839
TRAPtype transport system periplasmic component predicted Nacetylneuraminatebinding protein.
 
 
 0.842
BF49_5229
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 0.842
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.