Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1890TRAPtype C4dicarboxylate transport system small permease component. (171 aa)    
Predicted Functional Partners:
BF49_1889
TRAPtype C4dicarboxylate transport system large permease component.
 
 0.979
BF49_1891
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.976
BF49_1854
TRAPtype C4dicarboxylate transport system large permease component.
 
 0.825
BF49_5578
TRAPtype C4dicarboxylate transport system large permease component.
 
 0.812
BF49_4841
TRAPtype transport system large permease component predicted Nacetylneuraminate transporter.
 
 0.810
BF49_7153
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.789
BF49_5576
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.783
BF49_5115
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.782
BF49_4352
TRAP transporter solute receptor unknown substrate 5.
 
 
 0.761
BF49_4839
TRAPtype transport system periplasmic component predicted Nacetylneuraminatebinding protein.
 
 
 0.757
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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