STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1900LDtranspeptidase YcbB. (449 aa)    
Predicted Functional Partners:
BF49_4398
Protein of unknown function DUF882.
 
   
 0.757
BF49_1901
Internalin putative; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.514
BF49_5047
Cell division protein FtsI Peptidoglycan synthetase EC 241129.
     
 0.504
BF49_7011
Cobaltcontaining nitrile hydratase subunit alpha EC 42184.
     
  0.504
BF49_7012
Cobaltcontaining nitrile hydratase subunit beta EC 42184; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.
     
  0.504
BF49_7013
Putative metal chaperone involved in Fenitrile hydratase activation GTPase of COG0523 family.
     
  0.494
BF49_0741
Multimodular transpeptidasetransglycosylase EC 241129 EC 34.
     
 0.437
BF49_5044
NacetylmuramoylLalanine amidase EC 35128.
   
 
 0.436
BF49_1585
Multimodular transpeptidasetransglycosylase EC 241129 EC 34.
     
 0.425
BF49_7276
Multimodular transpeptidasetransglycosylase EC 241129 EC 34.
     
 0.425
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.