STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1900LDtranspeptidase YcbB. (449 aa)    
Predicted Functional Partners:
BF49_4398
Protein of unknown function DUF882.
 
   
 0.744
BF49_1901
Internalin putative; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.517
BF49_5047
Cell division protein FtsI Peptidoglycan synthetase EC 241129.
     
 0.466
BF49_0741
Multimodular transpeptidasetransglycosylase EC 241129 EC 34.
     
 0.433
BF49_0742
NacetylmuramoylLalanine amidase EC 35128.
     
 0.428
BF49_7247
NacetylmuramoylLalanine amidase.
     
 0.421
BF49_1585
Multimodular transpeptidasetransglycosylase EC 241129 EC 34.
     
 0.419
BF49_7276
Multimodular transpeptidasetransglycosylase EC 241129 EC 34.
     
 0.419
BF49_0588
Probable exported protein STY0357.
  
   
 0.416
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase EC 242; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
     
 0.411
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.