Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_1908Ferredoxin reductase. (381 aa)    
Predicted Functional Partners:
adc
Acetoacetate decarboxylase EC 4114; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
 
   
 0.705
BF49_1107
Acetoacetate decarboxylase EC 4114.
 
   
 0.696
BF49_1909
Dbetahydroxybutyrate dehydrogenase EC 11130.
 
 
   0.657
BF49_1907
FIG00440739 hypothetical protein.
       0.535
BF49_5562
Polyhydroxyalkanoic acid synthase.
 
   
 0.497
BF49_5244
Poly3hydroxyalkanoate synthetase.
 
   
 0.479
BF49_3545
Poly3hydroxyalkanoate synthetase.
 
   
 0.476
BF49_0692
Polyhydroxyalkanoic acid synthase.
 
   
 0.471
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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