Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1934FIG00445578 hypothetical protein. (173 aa)    
Predicted Functional Partners:
BF49_1933
Major facilitator superfamily protein.
 
     0.885
BF49_1935
Glycogen debranching enzyme.
 
     0.802
BF49_1936
ABC transporter HlyBMsbA family.
 
     0.770
BF49_2127
Blr7651 hypothetical protein.
 
     0.761
BF49_4653
Blr7651 hypothetical protein.
 
     0.758
BF49_2065
Hypothetical protein.
  
     0.603
BF49_4826
Flagellar protein FlgJ peptidoglycan hydrolase EC 321.
  
    0.476
BF49_1937
Glycosyl transferase group 1.
 
     0.449
BF49_5929
FIG01006708 hypothetical protein.
  
     0.449
BF49_4307
Putative diheme cytochrome c553.
  
     0.436
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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