Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1954Sulfur oxidation protein SoxX. (150 aa)    
Predicted Functional Partners:
BF49_1957
Sulfur oxidation protein SoxA.
 
 
 0.978
BF49_2306
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.955
BF49_1953
Sulfide dehydrogenase flavocytochrome C flavoprotein chain precursor EC 182.
 
  
 0.951
BF49_7177
Sulfur oxidation protein SoxA.
 
 
 0.942
BF49_5272
Cytochrome c oxidase polypeptide III EC 1931.
  
 0.926
BF49_5273
Cytochrome c oxidase polypeptide I EC 1931; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 0.926
BF49_7174
Sulfur oxidation protein SoxX.
  
  
  0.921
BF49_1955
Sulfur oxidation protein SoxY.
 
   
 0.909
BF49_1956
Sulfur oxidation protein SoxZ.
 
   
 0.909
BF49_2624
Tungstencontaining formate dehydrogenase beta subunit.
  
 0.893
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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