Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1955Sulfur oxidation protein SoxY. (121 aa)    
Predicted Functional Partners:
BF49_1956
Sulfur oxidation protein SoxZ.
 
 
 
 0.985
BF49_1957
Sulfur oxidation protein SoxA.
 
   
 0.958
BF49_7176
Sulfur oxidation protein SoxZ.
 
 
 
 0.937
BF49_7175
Sulfur oxidation protein SoxY.
  
  
 
0.922
BF49_5393
FIG00440919 hypothetical protein.
  
  
 
0.917
BF49_1954
Sulfur oxidation protein SoxX.
 
   
 0.909
BF49_1953
Sulfide dehydrogenase flavocytochrome C flavoprotein chain precursor EC 182.
 
   
 0.892
BF49_7179
Sulfur oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
   
 0.804
BF49_7177
Sulfur oxidation protein SoxA.
 
   
 0.796
BF49_1793
Lipocalinrelated protein and BosCanEqu allergen.
 
   
 0.772
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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