STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1969FIG00439413 hypothetical protein. (262 aa)    
Predicted Functional Partners:
BF49_0994
FIG00440764 hypothetical protein.
  
     0.681
BF49_6892
FIG01265301 hypothetical protein.
  
     0.675
BF49_2981
FIG00441988 hypothetical protein.
  
     0.647
rnc
Ribonuclease III EC 31263; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
 0.625
BF49_6641
Bll4915 protein.
  
     0.618
BF49_3228
Transcriptional regulator TetR family.
  
     0.617
BF49_6222
InterPro IPR001687IPR002937 COGs COG0492.
  
    0.617
BF49_3972
ATPdependent helicase HrpB.
    
 0.613
BF49_6409
FIG00443059 hypothetical protein.
  
   
 0.600
BF49_3904
Blr0101 hypothetical protein.
  
     0.575
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.