Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1974Hypothetical protein. (68 aa)    
Predicted Functional Partners:
BF49_1975
Carboxymuconolactone decarboxylase.
 
     0.839
BF49_6553
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.783
BF49_2686
Osuccinylbenzoic acidCoA ligase EC 62126.
  
 0.766
BF49_1976
Dbetahydroxybutyrate dehydrogenase EC 11130.
 
     0.760
BF49_6971
Hypothetical protein.
  
 0.757
recF
DNA recombination and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.669
BF49_5306
TPR repeat.
  
 0.659
BF49_5213
Hypothetical protein in cluster with At3g50560like gene family.
  
     0.644
BF49_1812
NADPHcytochrome P450 reductase.
  
 0.638
BF49_4102
HMPPP hydrolase pyridoxal phosphatase Cof detected in genetic screen for thiamin metabolic genes PMID15292217.
  
  0.636
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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