STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2004Mandelate racemasemuconate lactonizing enzyme family protein. (389 aa)    
Predicted Functional Partners:
BF49_2003
Protein of unknown function DUF900 hydrolase family protein.
       0.705
BF49_3903
Lfuconolactone hydrolase.
 
  
 0.589
BF49_2826
2dehydro3deoxygalactonokinase EC 27158.
 
 
 0.539
BF49_1718
Altronate dehydratase EC 4217.
 
  
 0.511
BF49_1371
FIG00439895 hypothetical protein.
 
  
 0.497
BF49_2002
FIG00446532 hypothetical protein.
    
  0.493
BF49_4837
Dmannonate oxidoreductase EC 11157.
 
 
 0.484
BF49_1133
2dehydro3deoxygluconate kinase EC 27145.
 
  
 0.468
BF49_3902
Lfucobetapyranose dehydrogenase EC 111122.
 
   
 0.467
BF49_2272
Radical SAM domain protein.
     
  0.464
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.